species:   Rhsol
pid:       PID1786
parent:    novel-milR-55
paralog:   
locus:     KB317699.1:1029119-1029203
matures:   ['AAUGUUCCAAGAAGCUCAAAGCCC', 'CCUGGUCAUUGUGGAUAGCUUU']
srr:       SRR10747101
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.GCA_000334115.1_Rhisol_AG1IA_1.0_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Meng2021-lx.SRR10747101.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Meng2021-lx.SRR10747101.cram KB317699.1:1029119-1029203

1 out of bounds
3 alignments
2 proper strand
2 stranded perfect matches

       **************************                ****************************        
CAAUUCCAUCCUGGUCAUUGUGGAUAGCUUUACCAAGUAUGUCAUCCUGGUAGAAUGUUCCAAGAAGCUCAAAGCCCUGGAAUUG
((((((((..(((((..(((.(((((..(((((((.(........).))))))).))))))))...)))...))...))))))))
-----------------------------------------------------AAUGUUCCAAGAAGCUCAAAGCCC-------- l=24 a=0 c
---------CCUGGUCAUUGUGGAUAGCUUU------------------------------------------------------ l=22 a=0 c*
---------------------------------------------------AGAAUGUUCCAAGAAGCUCAAAGCCC-------- l=26 a=1 ma
---------CCUGGUCAUUGUGGAUAGCUUUAC---------------------------------------------------- l=24 a=0 ma*

---------------------------------------------------AGAAUGUUCCAAGAAGCUCAAAGCCC-------- l=26 a=1 (ma)
-----------------------------------------------------AAUGUUCCAAGAAGCUCAAAGCC--------- l=23 a=1 

mb-01011
ax-1001001
ku-01
ss-100010101100
fn-001
